| |
|
|
 | Acesso ao texto completo restrito à biblioteca da Embrapa Pecuária Sul. Para informações adicionais entre em contato com cppsul.biblioteca@embrapa.br. |
|
Registro Completo |
|
Biblioteca(s): |
Embrapa Pecuária Sul. |
|
Data corrente: |
08/10/2020 |
|
Data da última atualização: |
08/10/2020 |
|
Tipo da produção científica: |
Artigo em Periódico Indexado |
|
Autoria: |
CAMPOS, G. S.; SOLLERO, B. P.; REIMANN, F. A.; JUNQUEIRA, V. S.; CARDOSO, L. L.; YOKOO, M. J. I.; BOLIGON, A. A.; BRACCINI, J.; CARDOSO, F. F. |
|
Afiliação: |
Gabriel Soares Campos, UFPEL; BRUNA PENA SOLLERO, CPPSUL; Fernando Antonio Reimann, UFPEL; Vinicius Silva Junqueira, UFV; Leandro Lunardini Cardoso, UFPEL; MARCOS JUN ITI YOKOO, CPPSUL; Arione Augusti Boligon, UFPEL; José Braccini, UFRGS; FERNANDO FLORES CARDOSO, CPPSUL. |
|
Título: |
Tag-SNP selection using Bayesian genomewide association study for growth traits in Hereford and Braford cattle. |
|
Ano de publicação: |
2020 |
|
Fonte/Imprenta: |
Journal of Animal Breeding and Genetics, v. 137, n. 5, p. 449-467, Sept. 2020. |
|
DOI: |
https://doi.org/10.1111/jbg.12458 |
|
Idioma: |
Inglês |
|
Conteúdo: |
The aim of this study was to perform a Bayesian genomewide association study (GWAS) to identify genomic regions associated with growth traits in Hereford and Braford cattle, and to select Tag‐SNPs to represent these regions in low‐density panels useful for genomic predictions. In addition, we propose candidate genes through functional enrichment analysis associated with growth traits using Medical Subject Headings (MeSH). Phenotypic data from 126,290 animals and genotypes for 131 sires and 3,545 animals were used. The Tag‐SNPs were selected with BayesB (π = 0.995) method to compose low‐density panels. The number of Tag‐single nucleotide polymorphism (SNP) ranged between 79 and 103 SNP for the growth traits at weaning and between 78 and 100 SNP for the yearling growth traits. The average proportion of variance explained by Tag‐SNP with BayesA was 0.29, 0.23, 0.32 and 0.19 for birthweight (BW), weaning weight (WW205), yearling weight (YW550) and postweaning gain (PWG345), respectively. For Tag‐SNP with BayesA method accuracy values ranged from 0.13 to 0.30 for k‐means and from 0.30 to 0.65 for random clustering of animals to compose reference and validation groups. Although genomic prediction accuracies were higher with the full marker panel, predictions with low‐density panels retained on average 76% of the accuracy obtained with BayesB with full markers for growth traits. The MeSH analysis was able to translate genomic information providing biological meanings of more specific gene products related to the growth traits. The proposed Tag‐SNP panels may be useful for future fine mapping studies and for lower‐cost commercial genomic prediction applications. MenosThe aim of this study was to perform a Bayesian genomewide association study (GWAS) to identify genomic regions associated with growth traits in Hereford and Braford cattle, and to select Tag‐SNPs to represent these regions in low‐density panels useful for genomic predictions. In addition, we propose candidate genes through functional enrichment analysis associated with growth traits using Medical Subject Headings (MeSH). Phenotypic data from 126,290 animals and genotypes for 131 sires and 3,545 animals were used. The Tag‐SNPs were selected with BayesB (π = 0.995) method to compose low‐density panels. The number of Tag‐single nucleotide polymorphism (SNP) ranged between 79 and 103 SNP for the growth traits at weaning and between 78 and 100 SNP for the yearling growth traits. The average proportion of variance explained by Tag‐SNP with BayesA was 0.29, 0.23, 0.32 and 0.19 for birthweight (BW), weaning weight (WW205), yearling weight (YW550) and postweaning gain (PWG345), respectively. For Tag‐SNP with BayesA method accuracy values ranged from 0.13 to 0.30 for k‐means and from 0.30 to 0.65 for random clustering of animals to compose reference and validation groups. Although genomic prediction accuracies were higher with the full marker panel, predictions with low‐density panels retained on average 76% of the accuracy obtained with BayesB with full markers for growth traits. The MeSH analysis was able to translate genom... Mostrar Tudo |
|
Palavras-Chave: |
Gado Braford. |
|
Thesagro: |
Gado de Corte; Gado Hereford; Seleção. |
|
Categoria do assunto: |
-- |
|
Marc: |
LEADER 02608naa a2200277 a 4500
001 2125369
005 2020-10-08
008 2020 bl uuuu u00u1 u #d
024 7 $ahttps://doi.org/10.1111/jbg.12458$2DOI
100 1 $aCAMPOS, G. S.
245 $aTag-SNP selection using Bayesian genomewide association study for growth traits in Hereford and Braford cattle.$h[electronic resource]
260 $c2020
520 $aThe aim of this study was to perform a Bayesian genomewide association study (GWAS) to identify genomic regions associated with growth traits in Hereford and Braford cattle, and to select Tag‐SNPs to represent these regions in low‐density panels useful for genomic predictions. In addition, we propose candidate genes through functional enrichment analysis associated with growth traits using Medical Subject Headings (MeSH). Phenotypic data from 126,290 animals and genotypes for 131 sires and 3,545 animals were used. The Tag‐SNPs were selected with BayesB (π = 0.995) method to compose low‐density panels. The number of Tag‐single nucleotide polymorphism (SNP) ranged between 79 and 103 SNP for the growth traits at weaning and between 78 and 100 SNP for the yearling growth traits. The average proportion of variance explained by Tag‐SNP with BayesA was 0.29, 0.23, 0.32 and 0.19 for birthweight (BW), weaning weight (WW205), yearling weight (YW550) and postweaning gain (PWG345), respectively. For Tag‐SNP with BayesA method accuracy values ranged from 0.13 to 0.30 for k‐means and from 0.30 to 0.65 for random clustering of animals to compose reference and validation groups. Although genomic prediction accuracies were higher with the full marker panel, predictions with low‐density panels retained on average 76% of the accuracy obtained with BayesB with full markers for growth traits. The MeSH analysis was able to translate genomic information providing biological meanings of more specific gene products related to the growth traits. The proposed Tag‐SNP panels may be useful for future fine mapping studies and for lower‐cost commercial genomic prediction applications.
650 $aGado de Corte
650 $aGado Hereford
650 $aSeleção
653 $aGado Braford
700 1 $aSOLLERO, B. P.
700 1 $aREIMANN, F. A.
700 1 $aJUNQUEIRA, V. S.
700 1 $aCARDOSO, L. L.
700 1 $aYOKOO, M. J. I.
700 1 $aBOLIGON, A. A.
700 1 $aBRACCINI, J.
700 1 $aCARDOSO, F. F.
773 $tJournal of Animal Breeding and Genetics$gv. 137, n. 5, p. 449-467, Sept. 2020.
Download
Esconder MarcMostrar Marc Completo |
|
Registro original: |
Embrapa Pecuária Sul (CPPSUL) |
|
|
Biblioteca |
ID |
Origem |
Tipo/Formato |
Classificação |
Cutter |
Registro |
Volume |
Status |
URL |
Voltar
|
|
|
| Registros recuperados : 26 | |
| 7. |  | SCHMIDT, P. I.; CAMPOS, G. S.; CAETANO, V. O.; SIMÕES, M. S.; BOLIGON, A. A.; YOKOO, M. J. I. Análise genética de características relacionadas ao crescimento, temperamento e resistência a parasitas na raça Brangus. In: ENCONTRO DE PÓS-GRADUAÇÃO, 20.; SEMANA INTEGRADA DE ENSINO, PESQUISA E EXTENSÃO, 4., 2018, Pelotas. Anais eletrônicos... Pelotas: UFPel, 2018. ENPOS.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Pecuária Sul. |
|    |
| 8. | | CAMPOS, G. S.; BOLIGON, A. A.; YOKOO, M. J. I.; SOLLERO, B. P.; BRACCINI NETO, J.; CARDOSO, F. F. Acurácia da seleção genômica para características de crescimento e escores visuais ao sobreano em bovinos Hereford e Braford. In: SIMPÓSIO BRASILEIRO DE MELHORAMENTO ANIMAL, 11., 2015, Santa Maria, RS. Melhoramento animal da academia ao campo: uma parceria em construção: anais. Santa Maria, RS: SBMA: UFSM, 2015.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Pecuária Sul. |
| |
| 9. | | SCHMIDT, P. I.; CAMPOS, G. S.; CAETANO, V. O.; SIMÕES, M. S.; YOKOO, M. J. I.; BOLIGON, A. A. Índices econômicos de seleção para bovinos da raça Brangus. In: CONGRESSO DE INICIAÇÃO CIENTÍFICA, 27.; SEMANA INTEGRADA DE ENSINO, PESQUISA E EXTENSÃO, 4., 2018, Pelotas. Anais eletrônicos... Pelotas: UFPel, 2018. CIC.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Pecuária Sul. |
| |
| 10. | | KERN, E. L.; COBUCI, J. A.; COSTA, C. N.; BRACCINI NETO, J.; CAMPOS, G. S.; MCMANUS, C. M. Genetic parameters for longevity measures in Brazilian Holstein cattle using linear and threshold models. Archiv fur Tierzucht, v. 57, n. 33, p. 1-12, 2014.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 2 |
| Biblioteca(s): Embrapa Gado de Leite. |
| |
| 11. | | REIMANN, F. A.; BOLIGON, A. A.; CAMPOS, G. S.; CARDOSO, L. L.; JUNQUEIRA, V. S.; CARDOSO, F. F. Genetic parameters and accuracy of traditional and genomic breeding values for eye pigmentation, hair coat and breed standard in Hereford and Braford cattle. Livestock Science, v. 213, p. 44-50, July 2018.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 2 |
| Biblioteca(s): Embrapa Pecuária Sul. |
|  |
| 12. | | CAMPOS, G. S.; BRACCINI NETO, J.; OAIGEN, R. P.; CARDOSO, F. F.; COBUCI, J. A.; KERN, E. L.; CAMPOS, L. T.; BERTOLI, C. D.; McMANUS, C. M. Bioeconomic model and selection indices in Aberdeen Angus cattle. Journal of Animal Breeding and Genetics, Berlin, v. 131, n. 4, p. 305?312, Aug. 2014.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 2 |
| Biblioteca(s): Embrapa Pecuária Sul. |
| |
| 13. | | CAMPOS, G. S.; TIMPANI, V. D.; COLLARES, R. S.; GENRO, T. C. M.; SUÑÉ, R. W.; YOKOO, M. J. I.; CARVALHO, H. G. de; CARDOSO, F. F. Avaliação genômica para características ligadas à eficiência alimentar em bovinos da raça Angus. Bagé: Embrapa Pecuária Sul, 2023. 40 p. (Embrapa Pecuária Sul. Documentos, 170). Publicado também como impresso. ODS 2, ODS 12.| Biblioteca(s): Embrapa Pecuária Sul. |
| |
| 14. | | KERN, E. L.; COBUCI, J. A.; COSTA, C. N.; MCMANUS, C. M.; CAMPOS, G. S.; ALMEIDA, T. P.; CAMPOS, R. V. Genetic association between herd survival and linear type traits in Holstein cows under tropical conditions. Italian Journal of Animal Science, v. 13, p. 665-672, 2014.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 2 |
| Biblioteca(s): Embrapa Gado de Leite. |
| |
| 15. | | CAMPOS, G. S.; SOLLERO, B. P.; REIMANN, F. A.; JUNQUEIRA, V. S.; CARDOSO, L. L.; YOKOO, M. J. I.; BOLIGON, A. A.; BRACCINI, J.; CARDOSO, F. F. Tag-SNP selection using Bayesian genomewide association study for growth traits in Hereford and Braford cattle. Journal of Animal Breeding and Genetics, v. 137, n. 5, p. 449-467, Sept. 2020.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Pecuária Sul. |
| |
| 16. | | CAMPOS, G. S.; REIMANN, F. A.; SCHIMDT, P. I.; CARDOSO, L. L.; SOLLERO, B. P.; BRACCINI, J.; YOKOO, M. J. I.; BOLIGON, A. A.; CARDOSO, F. F. Threshold and linear models for genetic evaluation of visual scores in Hereford and Braford cattle. Animal Production Science, v. 59, n. 4, p. 619-627, 2019.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 2 |
| Biblioteca(s): Embrapa Pecuária Sul. |
| |
| 17. | | CARDOSO, F. F.; MATIKA, O.; DJIKENG, A.; MAPHOLI, N.; BURROW, H. M.; YOKOO, M. J. I.; CAMPOS, G. S.; GULIAS GOMES, C. C.; RIGGIO, V.; PONG-WONG, R.; ENGLE, B.; PORTO-NETO, L.; MAIWASHE, A.; HAYES, B. J. Multiple country and breed genomic prediction of tick resistance in beef cattle. Frontiers in Immunology, v. 12, 620847, June 2021.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Pecuária Sul. |
| |
| 18. | | CAVANI, L.; LOPES, F. B.; GIGLIOTID, R.; BRESOLIN, T.; CAMPOS, G. S.; OKINO, C. H.; GULIAS-GOMES, C. C.; CAETANO, A. R.; OLIVEIRA, M. C. de S.; CARDOSO, F. F.; ROSA, G. J. de M.; OLIVEIRA, H. N. de. Inferring phenotypic causal networks for tick infestation, Babesia bovis infection, and weight gain in Hereford and Braford cattle using structural equation models. Livestock Science, v. 238, 2020.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 2 |
| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
| |
| 19. | | CAVANI, L.; LOPES, F. B.; GIGLIOTI, R.; BRESOLIN, T.; CAMPOS, G. S.; OKINO, C. H.; GULIAS-GOMES, C. C.; CAETANO, A. R.; OLIVEIRA, M. C. de S.; CARDOSO, F. F.; ROSA, G. J. de M.; OLIVEIRA, H. N. de. Inferring phenotypic causal networks for tick infestation, Babesia bovis infection, and weight gain in Hereford and Braford cattle using structural equation models. Livestock Science, v. 238, aug. 2020, 104032. 8 p.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 2 |
| Biblioteca(s): Embrapa Pecuária Sudeste; Embrapa Pecuária Sul. |
| |
| 20. | | DALTRO, D. dos S.; SILVA, M. V. G. B.; GAMA, L. T. da; MACHADO, J. D.; KERN, E. L.; CAMPOS, G. S.; PANETTO, J. C. do C.; COBUCI, J. A. Estimates of genetic and crossbreeding parameters for 305-day milk yield of Girolando cows. Italian Journal of Animal Science, v. 19, n. 1, p. 86-94, 2020.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 1 |
| Biblioteca(s): Embrapa Gado de Leite. |
| |
| Registros recuperados : 26 | |
|
| Nenhum registro encontrado para a expressão de busca informada. |
|
|
